Showing posts with label scifi. Show all posts
Showing posts with label scifi. Show all posts

Monday, December 8, 2025

Reproductive Sci Fi


AKA 3 People Babies:

Mitochondrial Donation in a Reproductive Care Pathway for mtDNA Disease, New England Journal of Medicine (the original article), July 2025 https://dx.doi.org/10.1056/NEJMoa2503658

"Pronuclear transfer" is the unsensational way to call this, but compare the headline above to the dominant media headlines:

  • Eight babies born after mitochondrial donation treatment to reduce transmission of mitochondrial DNA disease, Medicalxpress 
  • Healthy babies born in Britain after scientists used DNA from three people to avoid genetic disease, AP News 
  • Three-person IVF technique spared children from inherited diseases, scientists say, Reuters 
  • Babies from three people's DNA prevents hereditary disease, BBC
  • 8 babies born with DNA from 3 people in world-first IVF trial aimed at minimizing risk of inherited disease, CBS 
  • Babies born with DNA from three people hailed as breakthrough – but questions remain, The Conversation 
  • Eight healthy babies born after IVF using DNA from three people, The Guardian
  • Mitochondrial Donation and PGT to Reduce Risk of Mitochondrial DNA Disease, Newcastle University via New England Journal of Medicine 


Thursday, July 4, 2024

More Advances in Vision Tech


Nanostructured flat lens uses machine learning to 'see' more clearly, while using less power
Jan 2024, phys.org

Meta Imager - a lense that processes the image on the front-end, so it can be thinner and process more efficiently.

Vanderbilt University: Hanyu Zheng et al, Multichannel meta-imagers for accelerating machine vision, Nature Nanotechnology (2024). DOI: 10.1038/s41565-023-01557-2

Image credit: AI Art - What Does Sadness Look Like - 2022


Lab-grown retinas explain why people see colors dogs can't
Jan 2024, phys.org

Just Retinal Organoids - By tweaking the cellular properties of retinal organoids, the research team found that a molecule called retinoic acid (an offshoot of vitamin A) determines whether a cone will specialize in sensing red or green light. Only humans with normal vision and closely related primates develop the red sensor.

via Johns Hopkins University: Retinoic acid signaling regulates spatiotemporal specification of human green and red cones, PLoS Biology (2024). DOI: 10.1371/journal.pbio.3002464. 


A camera-based anti-facial recognition technique
Jan 2024, phys.org

Anti-Facial Recognition - obfuscating, synthesizing or changing images to increase the privacy of users

CamPro - whereas most techniques use post-processing to modify images after they were captured, this    technique works at the camera sensor level to produce images that can protect users' facial privacy without influencing other applications

Using a very simplified explanation - the team manipulated certain parameters at the signal processing layer of the camera, right after the sensor, to take away personal identifying information from the picture, but while leaving the other information like person detection and pose estimation. It works by adjusting the existing processing parameters, but without requiring redesigning the camera, and it's called "privacy-preserving by birth" (why not by design?).

What's more is that because the resulting image may not be "human readable", they put some code in there to make the face back into something that humans can see pretty good, yet doesn't have the data that a computer needs to see it. This is like how a stop sign with a picture of a banana on it can brick your self-driving car; it looks like a banana to you, or a mess of dots, or whatever, but to the computer it looks like something completely different and in fact makes the stop sign itself invisible.

via USSLAB at Zhejiang University: Wenjun Zhu et al, CamPro: Camera-based Anti-Facial Recognition, arXiv (2024). DOI: 10.48550/arxiv.2401.00151


Science fiction meets reality as researchers develop techniques to overcome obstructed views
Feb 2024, phys.org

Using an ordinary digital camera - "We're turning ordinary surfaces into mirrors to reveal regions, objects, and rooms that are outside our line of vision"

via University of South Florida: Robinson Czajkowski et al, Two-edge-resolved three-dimensional non-line-of-sight imaging with an ordinary camera, Nature Communications (2024). DOI: 10.1038/s41467-024-45397-7

AI Art - Vase of Golden Threads in Impossible Geometries by Escher and Lalique - 2022

Using 3D printing to make artificial eyeballs more quickly and accurately
Feb 2024, phys.org

Artificial eyeballs thought you knew

via Fraunhofer Institute for Computer Graphics Research at Technical University Darmstadt, NIHR Biomedical Research Centre for Ophthalmology at Moorfields Eye Hospital, UCL Institute of Ophthalmology: Johann Reinhard et al, Automatic data-driven design and 3D printing of custom ocular prostheses, Nature Communications (2024). DOI: 10.1038/s41467-024-45345-5


Pushing back the limits of optical imaging by processing trillions of frames per second
Mar 2024, phys.org

Femtophotography - trillions of frames per second, used for femtosecond laser ablation, shock-wave interaction with living cells, and optical chaos 

Optical Chaos - chaos generated by laser instabilities using different schemes in semiconductor and fiber lasers

via Énergie Matériaux Télécommunications Research Centre at INRS Institut National de la Recherche Scientifique, the Advanced Laser Light Source Laboratory, Institut Jean Lamour at the Université de Lorraine, and Huazhong University of Science and Technology: Jingdan Liu et al, Swept coded aperture real-time femtophotography, Nature Communications (2024). DOI: 10.1038/s41467-024-45820-z

 
AI-powered 'sonar' on smartglasses tracks gaze, facial expressions
Apr 2024, phys.org

Both use speakers and microphones mounted on an eyeglass frame to bounce inaudible soundwaves off the face and pick up reflected signals caused by face and eye movements. One device, GazeTrak, is the first eye-tracking system that relies on acoustic signals. The second, EyeEcho, is the first eyeglass-based system to continuously and accurately detect facial expressions and recreate them through an avatar in real-time.

via Cornell Smart Computer Interfaces for Future Interactions: Ke Li et al, GazeTrak: Exploring Acoustic-based Eye Tracking on a Glass Frame, arXiv (2024). DOI: 10.48550/arxiv.2402.14634


Advance in light-based computing shows capabilities for future smart cameras
Apr 2024, phys.org

A tiny array of transparent pixels could produce a fast, broadband, nonlinear response from low-power ambient light.

The thinness of the material makes it transparent, while it retains qualities that enable incoming photons to efficiently regulate electrical conductivity. The research team coupled the 2D semiconductor with a layer of liquid crystal and made it functional with an array of electrodes. The result is a smart filter comprising 10,000 pixels, each able to selectively and quickly darken in a nonlinear way when exposed to broadband ambient light.

"An inexpensive device measuring a couple of centimeters could make a low-powered camera work like a super-resolution camera"

via California NanoSystems Institute at UCLA: Dehui Zhang et al, Broadband nonlinear modulation of incoherent light using a transparent optoelectronic neuron array, Nature Communications (2024). DOI: 10.1038/s41467-024-46387-5

Thursday, January 11, 2024

Officially Human


Researchers create embryo-like structures from monkey embryonic stem cells for the first time
Apr 2023, phys.org

via Chinese Academy of Sciences in Shanghai: Zhen Liu, Cynomolgus monkey embryo model captures gastrulation and early pregnancy, Cell Stem Cell (2023). DOI: 10.1016/j.stem.2023.03.009

Image credit: Logo for an app that allows users to take photos and submit them so that our company can create tactile sensory puzzles from the photo [link]


With in vitro model advances, group proposes refined legal definition of an embryo
Aug 2023, phys.org

(This doesn't seem to have made it to the national news, so I'm less suspicious that it's some political propaganda stuff; not not suspicious, just less.)

International Society for Stem Cell Research: "Stem cell research has enabled the formation of models capable of organizing into structures that rudimentarily resemble embryos and reflect various degrees of completeness and developmental stages," says first author Nicolas Rivron, a development biologist at the Austrian Academy of Sciences.

"These new propositions are part of an effort to bring clarity to ongoing research—to better classify the types of structures formed in the laboratory, to refine the legal definition of human embryos, and to pinpoint what currently makes models and embryos different from the legal standpoint."

Officially human, their definition: "a group of human cells supported by elements fulfilling extra-embryonic and uterine functions that, combined, have the potential to form a fetus."

But this is the line that really hits me:

"This definition allows us to think about the conditions under which models, if improved, might eventually pass a tipping point and be legally considered embryos."

In other words, we are making people, and so we're starting to wonder at what point we will start calling them people. (Actually, these scientists are saying no, these embryos cannot form neonates, but that they are showing us things we never knew about the developing human, since it's hidden in the womb.)

via the International Society for Stem Cell Research and : Nicolas C. Rivron, An ethical framework for human embryology with embryo models, Cell (2023). DOI: 10.1016/j.cell.2023.07.028.


Researchers develop biodegradable optical fiber to measure or modulate electrical current in the body
Sep 2023, phys.org

A biocompatible and biodegradable optical fiber based on agar, a substance extracted from Gracilaria seaweed, when excited by coherent light, produces granular light patterns that modulate the agar's refraction index and create disturbances in the granular patterns, which can be used to detect bioelectrical stimuli, so it can be part of a sensor system for living things. 

via State University of Campinas's School of Mechanical Engineering in São Paulo, Gleb Wataghin Institute of Physics, and Gunma University in Japan: Eric Fujiwara et al, Agar-based optical sensors for electric current measurements, Scientific Reports (2023). DOI: 10.1038/s41598-023-40749-7

AI Art - Old Worker with Sombrero Operating a 3D Printer in Cosmic Space Graffiti - 2023

A non-invasive way to turn a cockroach into a cyborg
Sep 2023, phys.org

First, we made remote control roaches by smashing an electric circuit through their head. But now, it's as simple as slipping over their antennae a sleeve made of gold and plastic, and fixed in place by a blast of ultraviolet light, like plastic shrink-wrap.

Note to self -- insects don't get injured, they get damaged: "damaging cockroaches during attempts to control them results in a very short life expectancy, which then results in very little payoff for a lot of work".

via Nanyang Technological University in Singapore: Qifeng Lin et al, Resilient conductive membrane synthesized by in-situ polymerisation for wearable non-invasive electronics on moving appendages of cyborg insect, npj Flexible Electronics (2023). DOI: 10.1038/s41528-023-00274-z

Note: For a cockroach, their antenna is their nose, and so this is how we'll do it for humans too. (Except I see the laser pulses through the retina as a likely candidate as well.)

Artist's representation of a person with a robotic arm - Ekaterina Ivanova QMUL - 2023

One hour of training is all you need to control a third robotic arm
Sep 2023, phys.org

Today we bring you "Supernumerary Body Parts", because humans, as they were originally designed, are just not enough and we need to do better -- The study, published in the IEEE Open Journal of Engineering in Medicine and Biology, investigated the potential of supernumerary robotic arms to help people perform tasks that require more than two hands. 

via Queen Mary University of London, Imperial College London and The University of Melbourne: Yanpei Huang et al, Can Training Make Three Arms Better Than Two Heads for Trimanual Coordination?, IEEE Open Journal of Engineering in Medicine and Biology (2023). DOI: 10.1109/OJEMB.2023.3305808

Thursday, September 7, 2023

On Hella


Hella, by David Gerold, 2020
Good book, good writer. [link]

Classic scifi novel about living on an alien planet. Here's some notes -- 

On waiting two generations before naming a place after a person: None of the places on Hella are named after people. The First Hundred established that rule. They didn't want half the places on the planet named after them. They said they wanted names to represent the spirit of the place. They were quite adamant about it. They didn't want to have future generations saddled with shallow memorials, for people they didn't know or barely remembered. They made a rule for themselves that they wouldn't name any place after any living person, and they would wait 50 years after the person's death so that at least two generations of people could decide if that person's contributions ended up being much more important than anyone might have realized at the time. (p137)

On Intelligence Engines: There's this thing about people. If an intelligence engine says it, people think it's true. ... But if an intelligence engine has its own agenda, then it isn't telling you what you need to know. It's telling you only what it wants you to know and that's where trusting it starts to get dangerous. (p197)

After the main character gets a change to his brain chip, during a post-recovery session, he asks the robot if he passed the test (which is like a reverse Turing, and we're already there actually w captchas etc. but still, well done). (p344)

After the main character has his chip taken out, which gives him access to the network, if you will, and now he's describing his experience with a regular brain -- "I do miss being able to know stuff just by thinking." And so we get real Isaac Asimov's "the computer is in my head" vibes, a classic. Good work again. (p422)

About the Author - David Gerrold has been writing professionally for half a century. He created the tribbles for Star Trek and the Sleestaks for Land Of The Lost. His most famous novel is The Man Who Folded Himself. His semi-autobiographical tale of his son's adoption, The Martian Child won both the Hugo and the Nebula awards, and was the basis for the 2007 movie starring John Cusack and Amanda Peet.

Monday, May 15, 2023

Solaris Shoutout


Recognizing the ocean as a living being is increasingly important for global sustainability, claim researchers
Feb 2023, phys.org

How can you read that headline and not think about Solaris?

Thursday, April 6, 2023

The Science Fiction That Writes Itself


Human brain organoids implanted into mouse cortex respond to visual stimuli for first time
Dec 2022, phys.org

Mouse blood vessels grew into the organoid providing necessary nutrients and oxygen to the implant.
They are compatible, they latched on and are growing into the brain and working like normal brains.

I'll just copy the first paragraph exactly as-is, because this is what science fiction looks like as it's happening in real time:

A team of engineers and neuroscientists has demonstrated for the first time that human brain organoids implanted in mice have established functional connectivity to the animals' cortex and responded to external sensory stimuli. The implanted organoids reacted to visual stimuli in the same way as surrounding tissues, an observation that researchers were able to make in real time over several months thanks to an innovative experimental setup that combines transparent graphene microelectrode arrays and two-photon imaging.

via University of California San Diego: Madison N. Wilson et al, Multimodal monitoring of human cortical organoids implanted in mice reveal functional connection with visual cortex, Nature Communications (2022). DOI: 10.1038/s41467-022-35536-3

Image credit: Jared Michael


Lab-grown retinal eye cells make successful connections, open door for clinical trials to treat blindness
Jan 2023, phys.org

Organoid photoreceptor cells can reach out toward new neighbors with characteristic biological cords called axons, and plug into other retinal cell types in order to communicate.

via University of Wisconsin-Madison: Allison L. Ludwig et al, Re-formation of synaptic connectivity in dissociated human stem cell-derived retinal organoid cultures, Proceedings of the National Academy of Sciences (2023). DOI: 10.1073/pnas.2213418120

Thursday, May 12, 2022

The Inevitable


I'm not sure if this picture is supposed to be a joke - it seems to be a chronology of the evolution of a Nokia phone. If you don't get the joke I won't explain it, but the idea of technology evolving as if it were another form of life, that's Kevin Kelly's idea, or at least he gets lots of credit for popularizing it. (Dawkins coined memetics a long time ago.) This idea comes from his book What Technology Wants (2010).

Here's another book by Kelly, not as impactful for me, but it did have a couple points of interest:

The Inevitable: Understanding the 12 Technological Forces That Will Shape Our Future
Kevin Kelly, 2016

  • Magnus Carlsen is deemed the most computerlike of all chess players, trained by AI (p41-42)
  • Preventing Consciousness: We don't want our AI to be conscious, we just want it to be smart. "We might have to engineer ways to prevent consciousness in them." (p42) "And consciousness-free might become the new thing in AI services.
  • Firechat - decentralized wifi radio, used during the Hong Kong protests of 2014
  • Paying for emails - Esther Dyson, the asymmetry of emails, you should charge senders for reading your email (p186)
  • Prices head to zero? "There has been a downward trend in real commodity prices of about one percent per year over the last 140 years." International Monetary Fund, 2002
  • Recording in a diary is considered admirable. Recording in a spreadsheet is considered creepy." -Gary Wolf (p250)
  • Surveillance: a one-way panopticon, or mutual, transparent "coveillance" where other watchers watch the watchers (p259)
  • Holos - an artificial global cortex made of the network of billions of phones and computers, our brains are not doubling in size every few years, the Holos mind is. Who writes the code? We do. We think we're merely wasting time, but each time we click a link we strengthen a node somewhere in the holos mind, thereby programming it by using it, teaching the holos what we thing is important. (p292-293)

Tuesday, March 29, 2022

Robots or Not Here We Come

A security robot in Washington DC fell into a shallow fountain and the world immediately began making fun of it for "committing suicide". (NPR, 2017)

AKA Coffee Robots

Starbucks to get its first unionised US store since 1980s
Dec 2021, BBC News

"I've left crying because of the way customers treat us. They treat us like coffee robots."

Monday, June 21, 2021

Plot Twist

Let's start here -- people have been scared of electromagnetic radiation (aka EMF) for a long time. And you can't really blame them; microwave ovens are pretty hard to believe. Wifi even more so. The same device that can "send movies through the air on invisible electromagnetic waves" can't also read my mind and control my thoughts?

The next exit off the Tinfoil Highway, after mind control, is for cancer. Working in Indoor Air Quality and Environmental Health, we get phone calls from time to time about concerns over EMF exposure. People have some symptoms, either physical or mental, and they wonder if something in their environment is causing the problem, and they know they have these magical waves floating all around their home every day. Technically, we can monitor for EMF exposure, there's equipment for it, but chances are the EMF is not your problem. After years and years of using cell phones, we can't seem to get any signal on them causing cancer.  

But that's hard to explain to someone who is already convinced. And it puts the environmental consultant in the awkward position of offending a potential client.

But now, we get these new discoveries which are the stuff of conspiracy theory nightmares, only in reverse:

Electromagnetic fields hinder spread of breast cancer, study shows
Mar 2021, phys.org
Electromagnetic fields appear to slow cancer cells' metabolism selectively by changing the electrical fields inside an individual cell.
via Ohio State University:  Travis H. Jones et al, Directional Migration of Breast Cancer Cells Hindered by Induced Electric Fields May Be Due to Accompanying Alteration of Metabolic Activity, Bioelectricity (2021). DOI: 10.1089/bioe.2020.0048
Tiny implant cures diabetes in mice without triggering immune response
Jun 2021, phys.org
"The implants floated freely inside the animals, and when we removed them after about six months, the insulin-secreting cells inside the implants still were functioning. And importantly, it is a very robust and safe device."
via Washington University School of Medicine: X. Wang el al., "A nanofibrous encapsulation device for safe delivery of insulin-producing cells to treat type 1 diabetes," Science Translational Medicine (2021). https://stm.sciencemag.org/lookup/doi/10.1126/scitranslmed.abb4601
Controlling insulin production with a smartwatch
Jun 2021, phys.org
"No naturally occurring molecular system in human cells responds to green light, so we had to build something new."

The ETH professor and his colleagues ultimately developed a molecular switch that, once implanted, can be activated by the green light of a smartwatch.

The switch is linked to a gene network that the researchers introduced into human cells. Depending on the configuration of this network—in other words, the genes it contains—it can produce insulin or other substances as soon as the cells are exposed to green light. Turning the light off inactivates the switch and halts the process.
via ETH Zurich: Mansouri M, Hussherr M-D, Strittmatter T, Buchmann P, Xue S, Camenisch G, Fussenegger M: Smart-watch-programmed green-light-operated percutaneous control of therapeutic transgenes. Nature Communications, 2021, 7 June; DOI: 10.1038/s41467-021-23572-4
Remote control of blood sugar - Electromagnetic fields treat diabetes in animal models
Oct 2020, phys.org

Exposing diabetic mice to a combination of static electric and magnetic fields for a few hours per day normalizes two major hallmarks of type 2 diabetes. And it works by remote control, and it can be applied in your sleep to normalize your blood sugar for the rest of the day.

And this makes it even better; "The initial finding was pure serendipity." One scientist borrowed another scientist's mice; he was working on EMF exposure, and she was working on blood sugar. Using his mice in her experiment, she found something strange going on. Now we think the EMFs prolong activation of superoxide molecules in the liver, rebalancing the body's response to insulin.

Later, they even treated human liver cells with EMFs, for six hours, and found that the surrogate marker for insulin sensitivity improved.

via Calvin S. Carter et al, Exposure to Static Magnetic and Electric Fields Treats Type 2 Diabetes, Cell Metabolism (2020). DOI: 10.1016/j.cmet.2020.09.012

Wednesday, June 16, 2021

On Quantum Updates and the Photon Revolution


Quantum things are a big deal these days, but you know what's even more of a big deal? Photons. Just wait, you'll be getting upgraded from the Verizon Quantum plan to the Verizon Photon plan in like 2 years tops. Photons, i.e., light, is the electricity of the 21st century. 

^That image btw: "Stimulated Photon Emission" -- Illustration of a gold-covered probe tip injecting electrons into a carefully located imperfection in an atomically thin material. The energy from each electron causes the highly localized emission of a single photon, which may then be guided to a detector. Credit: Ignacio Gaubert, 2020.

Time-reversal of an unknown quantum state
Aug 2020, phys.org

Stochastic baths, who can say no?
Abstract - In the present work, the scientists propose using a thermodynamic reservoir at finite temperatures to form a high-entropy stochastic bath to thermalize a given quantum system and experimentally increase thermal disorder or entropy in the system. 
-A. V. Lebedev et al. Time-reversal of an unknown quantum state, Communications Physics (2020). DOI: 10.1038/s42005-020-00396-0
-Seth Lloyd et al. Quantum principal component analysis, Nature Physics (2014). DOI: 10.1038/nphys3029
-Gonzalo Manzano et al. Quantum Fluctuation Theorems for Arbitrary Environments: Adiabatic and Nonadiabatic Entropy Production, Physical Review X (2018). DOI: 10.1103/PhysRevX.8.031037
An electrical trigger fires single, identical photons
Oct 2020, phys.org

First time we're seeing "memory" used as an analogy for quantum coherence.

Also, "photons on demand"; wait for it.

via: Bruno Schuler et al, Electrically driven photon emission from individual atomic defects in monolayer WS2, Science Advances (2020). DOI: 10.1126/sciadv.abb5988

Quantum entanglement demonstrated aboard orbiting CubeSat
Jun 2020, phys.org

Quantum computing in outer space.
In a critical step toward creating a global quantum communications network, researchers have generated and detected quantum entanglement onboard a CubeSat nanosatellite weighing less than 2.6 kilograms and orbiting the Earth.
The coldest computers in the world
Aug 2020, BBC News

Also in outer space.

The world's first integrated quantum communication network
Jan 2021, phys.org

Yes they have; via the University of Science and Technology of China.

Using drones to create local quantum networks
Jan 2021, phys.org

This is what it will be like:
A team of researchers affiliated with several institutions in China has used drones to create a prototype of a small airborne quantum network. In their paper published in the journal Physical Review Letters, the researchers describe sending entangled particles from one drone to another and from a drone to the ground.
Robots learn faster with quantum technology
Mar 2021, phys.org
"We are just at the beginning of understanding the possibilities of quantum artificial intelligence" says Philip Walther, head of an international collaboration of experimental physicists, "and thus every new experimental result contributes to the development of this field, which is currently seen as one of the most fertile areas for quantum computing."
Fertile, indeed.

Photon Avalanche, Mikołaj Łukaszewicz at Polish Academy of Sciences, 2021

'Multiplying' light could be key to ultra-powerful optical computers
Feb 2021, phys.org

Using polaritons - which are half-light and half-matter

Heat-free optical switch would enable optical quantum computing chips
Mar 2021, phys.org

Molybdenum disulfide ushers in era of post-silicon photonics
Mar 2021, phys.org

Study suggests that silicon could be a photonics game-changer
Apr 2021, phys.org

In addition to being good for controlling electronic information, silicon is also good for controlling light, which will be integral to quantum computing. 

Discovered by mistake of course:
"Our finding was lucky because we weren't looking for it. We were trying to understand how a very small number of phosphorus atoms in a silicon crystal could be used for making a quantum computer and how to use light beams to control quantum information stored in the phosphorus atoms.

"We were astonished to find that the phosphorus atoms were re-emitting light beams that were almost as bright as the very intense laser we were shining on them. We shelved the data for a couple of years while we thought about proving where the beams were coming from. It's a great example of the way science proceeds by accident, and also how pan-European teams can still work together very effectively."

via University of Surrey: Nils Dessmann et al, Highly efficient THz four-wave mixing in doped silicon, Light: Science & Applications (2021). DOI: 10.1038/s41377-021-00509-6

Wafer-scale production of graphene-based photonic devices
Feb 2021, phys.org

It's here, graphene chips to the rescue.

via Graphene Flagship: Marco A. Giambra et al, Wafer-Scale Integration of Graphene-Based Photonic Devices, ACS Nano (2021). DOI: 10.1021/acsnano.0c09758

Thursday, January 28, 2021

Attack of the Memes


AKA Digitally Mediated Social Contagion


It turns out 2021 really is the year of the meme. First the Washington, then Wall Street.

Memetics has been a perennial topic on Network Address, almost from the beginning. In fact, you might say the only two things you're likely to find on here are about memetics and fakes. 

Now that the mainstream pop culture bots have taken the wheel on this one, it's time to turn our attention further outwards. What will it be next, who knows. But if Vernor Vinge's Rainbows End is any manual for the future (as it sure as hell has been so far), then we should start seriously thinking about physics engines and artificially intelligent entities

Looking forward to an interesting decade ahead.

Sunday, January 10, 2021

Exobiological Skin Shell Sensors and Remote Control Metabolism Engineering



Just trying to come up with a catchy title for a quick list of developments in color application technology, but also biomimicry, wearables, and radioactive fungi. We're finishing off with some recent bits in the endless stream of synthetic biology advancements that will eventually define the 21st century.

Images courtesy of Nikon's Small World Challenge, best microscopy photos you can get!

The first one is a snail tongue by Dr. Igor Siwanowicz, and has nothing to do with the articles below.


Blue dye from red beets - Chemists devise a new pigment option
Apr 2020, phys.org

Non-toxic and Blue dye do not belong in the same sentence, historically. But now, a new class of dyes called pseudo-natural dyes use the same molecules that come from bright red beets (betalains), and they change the carbon-nitrogen chemical bond to a carbon-carbon bond. These new molecules are called quasibetalains, and they're blue.

On a sidenote, I do not recognize the opening statement in the above link, which says that blue is the most liked color the world over. In my art room, in the box of color pencils, and in the box of markers, both followed the same pattern every year for every class: the red pencils are the first to go, followed by blue; it gets fuzzy after that, but they all end up with nothing but brown, orange and yellow, and in that order. After all, brown is the entropic heat death of the rainbow, kind of an anti-color. 

B. C. Freitas-Dörr et al. A metal-free blue chromophore derived from plant pigments, Science Advances (2020). DOI: 10.1126/sciadv.aaz0421
http://dx.doi.org/10.1126/sciadv.aaz0421


Red light for stress - A color-changing organic crystal
May 2020, phys.org

Here we've got some organic crystals that change color based on pressure, but that can also return to their original shape. And that's called superelastochromism.

The idea here is to use them as sensors to show you where a building is getting out of whack. But there's a whole lot more you can imagine doing with these.

via the University of Tokyo: Toshiki Mutai et al, A superelastochromic crystal, Nature Communications (2020). DOI: 10.1038/s41467-020-15663-5


Liquid crystals create easy-to-read, color-changing sensors
Jul 2020, phys.org

Similar thing here; they're pushing and pulling liquid crystals to manipulate their color. The thing is, these don't just change color based on pressure, but even temperature. The walls in your room could change if the temperature shifts too quickly, for example. 
 
Then again, if you're wearing this, it could show you inflammation in your body. 

via the University of Chicago: "Prolate and oblate chiral liquid crystal spheroids". Juan de Pablo et al. Science Advances (2020). DOI: 10.1126/sciadv.aba6728 

Mohamed Ghassen Nouira makes purple dye.

Passion for purple revives ancient dye in Tunisia
Aug 2020, phys.org

Emperors hate him. This guy figures out how to take special snails and make purple dye out of them, just like how they used to do. Imperial clothiers and dye-makers knew how to do this centuries ago, and the art was lost to the time in between us and them. 

And that wasn't a mistake. The process of making Tyrian Purple was a secret, kind of like how we try to keep people from making believable hundred dollar bills. 

Think about it, if you, a Carthaginian hustlepimp, could make your own purple robe and deceive the court into thinking you were royalty, kind of like an ancient Borat, you could cause a ruckus. And we can't have a ruckus in the upper reaches of the royal elites. 

More importantly, empires made their fortunes selling this dye to other empires. Can't have some guy in his garage creeping into your marketshare. 

100,000 grams (100kg) of shelled murex yields 1 gram of Tyrian Purple, and goes for $2,400 - $4,000 per gram, and takes about a week's worth of work.

Sidenote, if you search the words "royal elite" it reeks of fake shit and dupery, which I think is funny because it's a redundant term that would only be used by people who don't really know what either word means.


Testing Chernobyl fungi as a radiation shield for astronauts
Aug 2020, phys.org

Bioshell.

They want to coat spaceships in a shell of superfungus to protect from radiation. They didn't create these fungi by engineering them in a lab; they found them. 

And where are on earth are you going to find an organism that metabolizes radioactive isotopes? Yes, thank you Chernobyl.

Graham K. Shunk et al. A Self-Replicating Radiation-Shield for Human Deep-Space Exploration: Radiotrophic Fungi can Attenuate Ionizing Radiation aboard the International Space Station, bioRxiv (2020). DOI: 10.1101/2020.07.16.205534. http://dx.doi.org/10.1101/2020.07.16.205534

Beetle leg - Aigars Jukna

Low-cost, fly footpad-like adhesive structure capable of repeated attachment/detachment
Aug 2020, phys.org

The design is based on fly feet, fine, that's pretty standard biomimicry. But the way they learned how to manufacutre the thing is by looking at how the fly itself makes flies, in the pupa. That's next level biomimicry. And it allows you to repeatedly stick and unstick  without losing any of its stickiness.

Ken-ichi Kimura et al, Framework with cytoskeletal actin filaments forming insect footpad hairs inspires biomimetic adhesive device design, Communications Biology (2020). DOI: 10.1038/s42003-020-0995-0


Florida mosquitoes - 750 million genetically modified insects to be released
Aug 2020, BBC News

I'm not sure where this belongs on this list, but modified mosquitoes were approved by federal regulators, fuck yeah.


Development of photovoltaics that can be applied like paint for real-life application
Sep 2020, phys.org

It's a solar cell solution that can coat surfaces. Eventually it will coat your body, so that you can live forever.

So Hyun Park et al, Developement of highly efficient large area organic photovoltaic module: Effects of nonfullerene acceptor, Nano Energy (2020). DOI: 10.1016/j.nanoen.2020.105147


Evergreen needles act as air quality monitors
Sep 2020, phys.org

Biosensors that measure the magnetism of the particulate matter that accumulates on the needles. Pretty smart.

Grant Rea‐Downing et al, Evergreen needle magnetization as a proxy for particulate matter pollution in urban environments, GeoHealth (2020). DOI: 10.1029/2020GH000286

Bindweed Epidermis - Michael Gibson

Electronic skin promises cheap and recyclable alternative to wearable devices
Nov 2020, phys.org

Man.

"Stretchy and fully-recyclable circuit board that's inspired by, and sticks onto, human skin."

via University of Colorado Boulder:  "Heterogeneous integration of rigid, soft, and liquid materials for self-healable, recyclable, and reconfigurable wearable electronics" Science Advances (2020). DOI: 10.1126/sciadv.abd0202


Engineers print wearable sensors directly on skin without heat
Oct 2020, phys.org

Direct printing for on-body sensors, usually hindered by the bonding process on skin. You can't sinter skin. So they add an "aid layer", basically a protective insulator for the skin that bonds at room temperature. And room temperature.


Artificial skin heals wounds and makes robots sweat
Jun 2020, phys.org

It's about time these robots take over. This is a skin (or "smart coating" when we're trying not to make it sound like the robots will become human and take over) that control fluid flow across its membrane via radio, or UV. And it's made of liquid-crystal molecules, like LCD.

Nylon Stockings - Alexander Klepnev

Thanks to flexoskeletons, these insect-inspired robots are faster and cheaper to make
Apr 2020, phys.org

Just flexoskeletons.


Machine learning takes on synthetic biology - algorithms can bioengineer cells for you
Sep 2020, phys.org

This one is about creating virtual laboratories that produce probable outcomes. They used to say, if you can't build it, you can't know it. But now, we just let the computer figure it out. 

Anyway, they specifically say engineering microbiomes. That's a bit new, because although engineering cells has now penetrated the consumer market (fake meat), engineering the entire ecosystem is a new frontier.

Nature Communications. A machine learning Automated Recommendation Tool for synthetic biology. Tijana Radivojević. (2020). DOI: 10.1038/s41467-020-18008-4

Unopened Flower Bud - Charles B. Krebs


Chemists expand genetic code of E. coli to produce 21st amino acid, giving it new abilities
Aug 2020, phys.org

Bodymods and beyond.

They've created a new amino acid, a "noncanonical amino acid" which kind of means not a real amino acid. It's called 5-hydroxyl-tryptophan (5HTP), and it's now the 21st amino acid. Kind of like how the ampersand was the 27th letter in the alphabet for a while.

They put the code for this protein into a "blank" space of the E. coli's genetic code. This means that the bacteria is now a factory that we designed to produce a molecule. It's a living factory. We're all living factories, bioreactors. But we don't make anything we want with our bodies. In this case, we've reverse-engineered the "making" process itself. The is called biohacking. 

Yuda Chen et al, Creation of Bacterial Cells with 5-Hydroxytryptophan as a 21st Amino Acid Building Block, Chem (2020). DOI: 10.1016/j.chempr.2020.07.013


Researchers develop a yeast-based platform to boost production of rare natural molecules
Aug 2020, phys.org

Again, biofarms of the future.


Engineers reprogram yeast cells to become microscopic drug factories
Sep 2020, phys.org

"Metabolic engineering" is another term for this. They're reprogramming yeast cells at the genetic level to convert sugars and amino acids into drugs. (And someting about the name has me thinking these are hallucinogenic drugs?)

Biosynthesis of medicinal tropane alkaloids in yeast, Nature (2020). DOI: 10.1038/s41586-020-2650-9 

Duckweed Root Decay - Dr. Robert Markus

Soil-powered fuel cell promises cheap, sustainable water purification
Oct 2020, phys.org

Soil microbial fuel cells (SMFCs)


Lowering atmospheric CO2 in large-scale renewable energy electrochemical process
Jun 2020, phys.org

This plus synthetic biology aka the biological revolution, or the 5th(?) industrial revolution, and I say that in 100 years, we'll be taking more CO2 out of the air than what we put in. 
Researchers at the National Renewable Energy Laboratory (NREL) have been focusing on improving electrochemical routes to convert CO2, which would otherwise be released into the atmosphere, into a range of value-added products.

the research team created a high rate of formate production and product selectivity, the latter of which is critical to reduce the need for further costly separations processes downstream. The formate could then be fed to biological organisms or coupled with enzymes, resulting in robust interactions between the formate and enzymes that yield high-density chemicals or fuels, such as ethylene or ethanol, respectively.

The program's larger goal is to use highly efficient electrons at industry scale to convert a waste compound such as CO2 into a multitude of more useful industry-relevant, energy-dense fuels or chemicals, such as polyethylene, which has a large global market.

Google conducts largest chemical simulation on a quantum computer to date
Aug 2020, phys.org

Stuff like this scares the shit out of me, although it's hard to articulate why. Probably because quantum chemical simulator is another word for reality generator, and I just don't think we're ready to activate the mass transference device yet.

Hartree-Fock on a superconducting qubit quantum computer, Science  28 Aug 2020: Vol. 369, Issue 6507, pp. 1084-1089, DOI: 10.1126/science.abb9811


IBM announces AI based chemistry lab - RoboRXN
Sep 2020, phys.org

Same as above.

Automating chemical synthesis with RoboRXN. https://www.ibm.com/blogs/research/2020/08/roborxn-automating-chemical-synthesis/

More Snail Tongue - Dr. Igor Siwanowicz

Remote control of blood sugar - Electromagnetic fields treat diabetes in animal models
Oct 2020, phys.org

And lastly; completely fucking bonkers.

Exposing diabetic mice to a combination of static electric and magnetic fields for a few hours per day normalizes two major hallmarks of type 2 diabetes. And it works by remote control, and it can be applied in your sleep to normalize your blood sugar for the rest of the day.

EMF therapy. Sounds like absolute and total bullshit. Remote control blood sugar.

And this makes it even better; "The initial finding was pure serendipity." One scientist borrowed another scientist's mice; he was working on EMF exposure, and she was working on bloodsugar. Using his mice in her experiment, she found something strange going on. Now we think the EMFs prolong activation of superoxide molecules in the liver, rebalancing the body's response to insulin.

Later, they even treated human liver cells with EMFs, for six hours, and found that the surrogate marker for insulin sensitivity improved.

Calvin S. Carter et al, Exposure to Static Magnetic and Electric Fields Treats Type 2 Diabetes, Cell Metabolism (2020). DOI: 10.1016/j.cmet.2020.09.012

Friday, July 10, 2020

At the Moment


Simulated 'Frankenfish brain-swaps' reveal senses control body movement
Mar 2020, phys.org

Fish brain transplants.

Researchers map tiny twists in magic-angle graphene
May 2020, phys.org

Magic angle graphene and twistronics.

Scientists apply 'twistronics' to light propagation and make a breakthrough discovery
Jun 2020, phys.org

More twistronics.

Second skin protects against chemical, biological agents
May 2020, phys.org

Nano this nano that.

Quantum rings in the grip of laser light
June 2020, phys.org

Ultracold atoms, optical traps, configurable optical lattices, quantum rings, lasers, laser beams, quantum simulators, defect-free crystals, matter trapped in an optical lattice.

"The atoms must be cooled to ultra-low temperatures. Only then will their energy be small enough not to break out of the subtle prepared trap,"
-Dr. Andrzej Ptok from the Institute of Nuclear Physics of the Polish Academy of Sciences (IFJ PAN) in Cracow.

-unrelated image source: "4 panel guy drinking depression" first hit actually called Overconfident Alcoholic thank you internet.

Keeping Track of the Development of Robots Rights


By observing humans, robots learn to perform complex tasks, such as setting a table
Mar 2020, phys.org

I know it's in quotes but they use the word belief in this article:

"Planning with Uncertain Specifications" (PUnS) system gives robots the humanlike planning ability to simultaneously weigh many ambiguous—and potentially contradictory—requirements to reach an end goal. In doing so, the system always chooses the most likely action to take, based on a "belief" about some probable specifications for the task it is supposed to perform.

Keeping Track of the Development of Robots Rights


By observing humans, robots learn to perform complex tasks, such as setting a table
Mar 2020, phys.org

I know it's in quotes but they use the word belief in this article:

"Planning with Uncertain Specifications" (PUnS) system gives robots the humanlike planning ability to simultaneously weigh many ambiguous—and potentially contradictory—requirements to reach an end goal. In doing so, the system always chooses the most likely action to take, based on a "belief" about some probable specifications for the task it is supposed to perform.

Wednesday, July 8, 2020

I'm the Computer Now


Wave physics as an analog recurrent neural network
Jan 2020, phys.org

This story is the craziest thing I've ever heard -- mind-numbing omnipotent future-speak. Computing with physical wave media in virtual dimensions? I'm in.

The electronic engineering department at Stanford "trained" physical wave systems to "learn" temporal data features.

If you see the word "train" these days you can bet they're talking about deep learning / neural networks. Usually, the way you train a network is to let it watch thousands and thousands of hours of youtube videos. Or any other data set you have available. (The Alcohol Language Corpus of drunk speech, perhaps?)

The network itself learns certain things about all the data you give it, and it assembles itself, arranges itself, to be able to detect those features in other images, let's say. Or you could have it learn what a "Vietnamese sandwich" is, and then synthesize Vietnamese sandwich versions of other sandwiches. Or you could have it show you the eignevector, the essence of a Vietnamese sandwich. (Spoiler, the essence of youtube is the face of a cat. That's what the network learned most by watching a several lifetime's worth of internet-video).

How is eigencat not a thing? Try that search for yourself, "youtube eigencat"

But these guys are talking about teaching not a network, but a wave of air. Not only is it not alive, it's not even a computer! Then again, the waves are the computer:
As proof of principle, they demonstrated an inverse-designed, inhomogeneous medium to perform English vowel classification based on raw audio signals as their waveforms scattered and propagated through it.
-source
You read that correctly. There are no circuits, no electricity. The physical system itself performs a recurrent processing dynamic, based on the way the waves move through space.

It's the new thing, analog machine learning.

Check out this old news on computers made of other stuff that's not computers, like the Magic Dust SupercomputerSlime Mold ComputerCrystal Calculators, and of course, the DNA computer.

Growing crystals to generate random numbers
Feb 2020, phys.org

Generating random numbers has always been a tricky problem for computer engineers because computers were designed to be as predictable as possible. 

One of the more pressing applications of random number generation is data encryption—most existing schemes rely on the constant generation of random numbers. 

The process of crystallization is random due to many factors that come into play as chemicals in a liquid solution evolve from a disordered state to one that is very organized. 

A camera took a picture of each of the cups as crystal formation began. Each of the pictures was converted to a zero or a one based on nothing but the geography of the crystal. The zeros and ones were then strung together to form a random number.

New study allows brain and artificial neurons to link up over the web
Mar 2020, phys.org

Novel Nanoelectronics has enabled brain neurons and artificial neurons to communicate with each other using brain-computer interfaces, artificial neural networks and advanced memory technologies (also known as memristors).

Cultivated lab rat neurons from Padova were distributed into memristive synapses in Southampton, and then connected to artificial silicon neurons in Zurich. 
-Alexantrou Serb et al. Memristive synapses connect brain and silicon spiking neurons, Scientific Reports (2020). DOI: 10.1038/s41598-020-58831-9

Advanced 'super-planckian' material exhibits LED-like light when heated
Mar 2020, phys.org

"We believe the light is coming from within the crystal, but there are so many planes within the structure, so many surfaces acting as oscillators, so much excitation, that it behaves almost like an artificial laser material," Lin said. "It's just not a conventional surface."

The robot that grips without touching
Jan 2020, phys.org

Acoustic waves -- method that makes it possible to lift and manipulate small objects entirely without touching them.

Chilling out - Physicists create exotic “fifth form of matter” on board the ISS
June 2020, Ars Technica

Algorithm quickly simulates a roll of loaded dice
May 2020, phys.org

Random number generation:
The algorithm, called the Fast Loaded Dice Roller (FLDR), was created by MIT graduate students and research scientists. 
FLDR can use up to 10,000 times less memory storage space than the Knuth-Yao approach, while taking no more than 1.5 times longer per operation.
Growing crystals to generate random numbers
Feb 2020, phys.org