Thursday, January 28, 2021

Attack of the Memes


AKA Digitally Mediated Social Contagion


It turns out 2021 really is the year of the meme. First the Washington, then Wall Street.

Memetics has been a perennial topic on Network Address, almost from the beginning. In fact, you might say the only two things you're likely to find on here are about memetics and fakes. 

Now that the mainstream pop culture bots have taken the wheel on this one, it's time to turn our attention further outwards. What will it be next, who knows. But if Vernor Vinge's Rainbows End is any manual for the future (as it sure as hell has been so far), then we should start seriously thinking about physics engines and artificially intelligent entities

Looking forward to an interesting decade ahead.

Friday, January 15, 2021

Fakes Await


Placebos prove powerful even when people know they're taking one
Aug 2020, phys.org

Did Someone Say Fake Drugs?
A team of researchers from Michigan State University, University of Michigan and Dartmouth College is the first to demonstrate that placebos reduce brain markers of emotional distress even when people know they are taking one.
Darwin A. Guevarra et al, Placebos without deception reduce self-report and neural measures of emotional distress, Nature Communications (2020). DOI: 10.1038/s41467-020-17654-y


Multivitamins' 'benefits' are all in your head: study
Nov 2020, phys.org

21,000 people from the 2012 U.S. National Health Interview Survey:
"Users of multivitamins and nonusers don't differ in any of these clinically measurable health outcomes, but they report at least feeling about 30% better in their overall health," said lead researcher Manish Paranjpe, a student at Harvard Medical School in Boston. 
Manish D Paranjpe et al. Self-reported health without clinically measurable benefits among adult users of multivitamin and multimineral supplements: a cross-sectional study, BMJ Open (2020). DOI: 10.1136/bmjopen-2020-039119


Fake pharmaceutical industry thrives in West Africa
BBC News, Jul 2020

China's Luckin Coffee slumps on 'fake' data news
Apr 2020, BBC News
The Nasdaq-listed company said its investigation had found that fabricated sales from the second quarter of last year to the fourth quarter amounted to about 2.2bn yuan ($310m; £250m). That equates to about 40% of its estimated annual sales.
For Posterity:
Coronavirus - YouTube tightens rules after David Icke 5G interview
Apr 2020, BBC News

AI Jesus


AI Jesus writes Bible-inspired verse
Sep 2020, phys.org

Stop Everything - AI Jesus: computer fed the entire text of the King James Bible, generates Old Testament dialogue.


image credit: Dutch artist Bas Uterwijk’s depiction of Jesus using Artbreeder which "uses GAN (generative confrontation network) to create a new image that looks realistic and gives life and personality to representations of famous people which are derived from paintings or sculpture" [link]

Cyborgs Among Us


Next-generation brain implants with more than a thousand electrodes can survive for more than six years
Apr 2020, phys.org

Get it straight - they're growing glass to implant into the brain.
Researchers have demonstrated the ability to implant an ultrathin, flexible neural interface with thousands of electrodes into the brain with a projected lifetime of more than six years.

25 micrometers thick with 360 electrodes.

Thermally grown layer of silicon dioxide less than a micrometer thick can ward off the hostile environment within the brain, degrading at a rate of only 0.46 nanometers per day

Because this form of glass is biocompatible, any trace amount that dissolves into the body should not create any problems of its own.

Next-gen organoids grow and function like real tissues
Sep 2020, phys.org

Read the whole article and watch the video. Jeez.

Intestinal organoids. They're bio-engineered miniature intestines using a an artificial gut-shaped microchannel. Mini-guts.

They make the substrate out of proteins already found in the gut, cross-linking them into a hydrogel and forming it from a laser printer-cutter. The substrate, or scaffold, is then seeded with intestinal stem cells, that know how to do nothing else but make an intestine. And they do.

Homeostatic mini-intestines through scaffold-guided organoid morphogenesis, Nature (2020). DOI: 10.1038/s41586-020-2724-8


A lab that reads—and writes—our dreams
Apr 2020, phys.org

Dormio is a glovelike device that allows researchers to communicate with sleeping subjects as they slip into hypnogogia - a fleeting semi-conscious state between wakefulness and sleep, by tracking heart rate, muscle tone and skin conductance, as well as playing a word or other audio sound as subjects drift into the transitional sleep stage.

Thursday, January 14, 2021

Hear Ye


Network of sounds - New research reveals the magic secret of human networks
Aug 2020, phys.org

On Synchronization, and human synchronization in particular:

There's a bunch of violinists in the room, all with head phones on. They all hear their own violin, as well as those of others. But each person is connected to only some of the others, creating a complex communication network, think of a criss-crossing links-and-nodes graph. But then, they slow down some of the connections, so there is no universal timing for the music they play. Instead, they fall in and out of sync with each other, depending on who they're connected to.

And then, they delay all the players, making it impossible to sync with anyone, and so each player ends up cancelling-out what they hear from all but one, so they can try to sync with that one person. 

The main point of doing all this is so you can watch how people shift their attention from one player to the other, by the speed at which they're playing. (I think). And that means that ultimately, we can now study how a network functions when each node has it's own decision-making ability. A highway network full of autonomous car nodes, or a social network full of infobot nodes, or a society spreading a pandemic, of course. 

via the Weizmann Institute, along with Stony Brook: Synchronization of complex human networks, Nature Communications (2020). DOI: 10.1038/s41467-020-17540-7. http://dx.doi.org/10.1038/s41467-020-17540-7


The rhythm of change - What a drum-beat experiment reveals about cultural evolution
Oct 2020, phys.org

This experiment is awesome. Santa Fe Institute and Dan Sperber, and you know what that means. It goes like this:

120 non-musicians are given a drum, and asked to play Telephone. You may know this as Chinese Whispers, or a transmission chain, or iterated learning. It's meant to mimic the propagation of information through culture. After being broken into groups, the first person copies a recording of a drumbeat rhythm, and the second person copies not the recording but the first person, and the third person copies the second person, and so on. (That's the game of Telephone.)

The rationale is that musical instruments are literally physically constrained by the socioeoconomic status of the culture making them, and so instruments can be an ideal denominator for comparing something as complex as culture.

And the outcome was that by placing the drums in different arrangements, they found clear differences in the "evolution" of the reiterated rhythms. This suggests that ecological factors, such as physical distance and motor activity, can affect the evolution of cultural products, and these effects can even be measured.

Motor constraints influence cultural evolution of rhythm, Proceedings of the Royal Society B (2020). doi: 10.6084/m9.figshare.c.5178247. https://pubmed.ncbi.nlm.nih.gov/33109010/


War songs and lullabies behind origins of music
Nov 2020, phys.org

Auditory cheesecake and a new evolutionary theory of the origins of music:
Music comes from the need for groups to impress allies and foes, and for parents to signal their attention to infants.

The researchers also take issue with other music origin theories including that making music arose out of a need for social bonding, or that it is merely a fancy evolutionary byproduct with no real purpose—'auditory cheesecake' as the cognitive psychologist Steven Pinker once called it.
It's not about sexual selection; it's not about bonding; it's about the audience:
"If we study music in traditional societies, we see it used consistently to form political alliances," said Hagen.

Elaborate musical performances from war dances to military bands and even college marching bands, are often used to show a coalition's strength and impress outsiders. Hagen pointed out that many state visits include a performance by a national orchestra or military band. Studies also show that people can detect how well synchronized musicians are, and connect that higher synchrony to a coalition's strength.

"We need to invest a lot in infants since human babies are born helpless and need all sorts of help from the adults around them," said psychologist Samuel Mehr, director of Harvard's Music Lab. "The parent or caregiver needs a reliable way to signal to the infant that they are attending to them. But attention is a covert property of the mind. It's hard to determine if someone is actually paying attention to you." Directed song gives the infant a signal that the adult is paying attention to their needs, Mehr added. When singing, the adults cannot be talking to other people. The music also alerts the baby to the adult's physical location. "That's information that can't really be faked," he said.
Samuel A. Mehr et al, Origins of music in credible signaling, Behavioral and Brain Sciences (2020). DOI: 10.1017/S0140525X20000345. https://pubmed.ncbi.nlm.nih.gov/32843107/

Post Script:
AI program writes music and lyrics
May 2020, phys.org
OpenAI this week announced the creation of an open source system called Jukebox that creates unique melodies and harmonies along with lyrics and vocalizations in the styles of popular artists from a large field of musical genres.

As an example, Jukebox does not yet compose larger musical themes such as choruses and repeating phrases.

 

Anthromimetic Cosmogenesis

Facebook bots to create a friendlier universe
Apr 2020, phys.org
"Facebook has created a parallel universe called the Web Enabled Simulation that will mimic the actions and behaviors of its users in an effort to detect how to best achieve a more harmonic community."
This sounds absolutely crazy: a virtual neighborhood filled with thousands of interacting socialbots, programmed to engage in good, as well as bad behavior, such as exploiting vulnerabilities of users or hacking personal information.

But this was the part that got me; it's not the content, but the way we're talking about simulated worlds "accidentally" interacting (infecting?) real people:
"Bots must be suitably isolated from real users to ensure that the simulation, although executed on real platform code, does not lead to unexpected interactions between bots and real users," the WES report states.
And to metalevel that shit, we're already enduring that threat, in the form of mis- and dis-information campaigns propagating on these same networks, and where there is NO purposeful separation (quarantine?) between bots and real users.

Metabolism of the Anthroposphere.

Post Script:
WW follows an earlier simulation by Facebook called Sapienz, which studied behavioral trends. But the older program ran on an isolated Facebook platform. WW will operate invisibly in real time on an actual Facebook platform.

Also:
Amid in-game Hong Kong protests, Chinese retailers drop Animal Crossing sales
Apr 2020, Ars Technica

AKA:

Notes:
WES: Agent-based User Interaction Simulation on Real Infrastructure, arXiv:2004.05363 [cs.SE] arxiv.org/abs/2004.05363
 

On Self and Individuality

What is an individual? Information theory may provide the answer
Apr 2020, phys.org

via the Santa Fe Institute:
The information theory of individuality (or ITI) describes emergent agency at different scales and with distributed communication networks.

The researchers look to structured information flows between a system and its environment, seeing the individual in terms of "dynamical processes and not as stationary objects".

Their model balances self-regulation and environmental influence at different levels from environmentally-scaffolded forms like whirlpools, to partially-scaffolded colonial forms like coral reefs and spider webs, to organismal individuals that are sculpted by their environment but strongly self-organizing.

Each is a strategy for propagating information forward through time.

"Individuality is about temporal uncertainty reduction."


Post Script:
Perhaps the biggest implication of this work is in how it places the observer at the center of evolutionary theory. "Just as in quantum mechanics," Krakauer says, "where the state of a system depends on measurement, the measurements we call natural selection dictate the preferred form of the individual. Who does the measuring? What we find depends on what the observer is capable of seeing." [link]
Notes:
David Krakauer et al. The information theory of individuality, Theory in Biosciences (2020). DOI: 10.1007/s12064-020-00313-7
 

Catch a Bot


Study reveals behavioral differences between bots and humans that could inform new machine learning algorithms
Apr 2020, phys.org

AKA I'm not a bot but I play one on the internet
The researchers found, among humans, trends that were not present among bots: Humans showed an increase in the amount of social interaction over the course of a session, illustrated by an increase in the fraction of retweets, replies and number of mentions contained in a tweet.

Humans also showed a decrease in the amount of content produced, illustrated by a decreasing trend in average tweet length.

These trends are thought to be due to the fact that as sessions progress, human users grow tired and are less likely to undertake complex activities, such as composing original content. Another possible explanation may be given by the fact that as time goes by, users are exposed to more posts, therefore increasing their probability to react and interact with content. In both cases, bots were shown to not be affected by such considerations and no behavioral change was observed from them.
image credit: Long Exposure Photo of Budapest Tram Lit Up with 30,000 LED Lights by Birimyi Krisztian

Eternal Life - D Melanogaster and C Elegans Live Forever


Scientists may have found one path to a longer life
Jul 2020, phys.org

I'm not interested in the article, just that these two man, they're already famous, and now they're eternal!

The above image is about allometric scaling, in this case metabolic rate vs body mass. It's not a direct connection to lifespan, but pretty close. We can now put C Elegans and D Melanogaster off the chart. 


Study finds hyperbaric oxygen treatments reverse aging process
Nov 2020, phys.org

Holy grail they say.

Exposure Science


Fox News hosts have measurable effect on COVID cases, study finds
Apr 2020, Ars Technica

The study comes from a group of researchers led by the University of Chicago's Leonardo Bursztyn and uses survey data gathered in April from 1,045 regular viewers of Fox News (aged 55 and over) to examine the timing of behavioral changes in response to the virus—when people began to cancel travel, isolate, increase the frequency of hand-washing, and so on.

Survey participants who preferred watching the alarmed newscaster began changing their behavior on average three days earlier than other Fox News viewers. Meanwhile, participants who preferred the more languid newscaster acted much later — five days after other Fox News viewers, and eight days after alarmed viewers.

I think the key word here is "alarm"?

And the above unrelated image is not a tree being struck by lightning, it's a synthetic light painting.
 

Yotta Yotta Yotta


The most personal device - Researchers probe how much psychological data smartphones generate
Jul 2020, phys.org

Your data is making me rich. 

Here's some of what I get from your identity-specific data collection device: communication patterns, social behavior and mobility, choice and consumption of music, selection of apps used, temporal distribution of phone usage throughout the day.

Granted, I will need a supercomputer to build and train my robot, but once I'm done, I can narrow down your Big 5, and sell you a vacuum, or a candidate. Maybe. But I do know who you are, maybe better than you do. 

Self-reported extraversion signals come from your social patterns, your degree of  conscientiousness can be seen in the timing of your daily rhythms, and to know if you score high on "openness" we needs lots and lots of random datapoints, like yottas of data. So thanks. 

Also:

Zeptoseconds - New world record in short time measurement
Oct 2020, phys.org

Precipitating the Noosphere


How conspiracy theories emerge—and how their storylines fall apart
Jun 2020, phys.org

^Came for the image: "Researchers produced a graphic representation of the narratives they analyzed, with layers for major subplots of each story, and lines connecting the key people, places and institutions within and among those layers." Credit: UCLA College, UCLA Samueli School of Engineering

Stay for the story: They studied Bridgegate NJ (real conspiracy) and Pizzagate DC (fake conspiracy). And the AI can figure out which is which.

All stories are a narrative network, the elements being the characters, places and things in the story, and the network emerging from the relationships between these elements.

If you tell the AI enough stories, it will detect patterns in the networks.

"One of the characteristics of a conspiracy theory narrative framework is that it is easily 'disconnected,'" said Timothy Tangherlini, one of the paper's lead authors, a professor in the UCLA Scandinavian section whose scholarship focuses on folklore, legend and popular culture. "If you take out one of the characters or story elements of a conspiracy theory, the connections between the other elements of the story fall apart."

Real stories can still make sense even if you remove one of the elements. Something about the myriad connections between the elements, because they're real people and places, all connected in other ways not intrinsic to the story. Robustness you might call it when talking about telecommunications networks; or redundancy.

Pizzagate? You remove Wikileaks from the network and it falls apart. (People used this massive data dump to link all kinds of elements in creative ways, building vast and complex stories. But the data was too big, and had no connection to each other beyond their being in the same repository. 

Also the timeframe, and for similar reasons, is a good point of contrast. Real stories build over time, because again, all the elements are connected in myriad ways with each other for reasons that have nothing to do with any one particular story. Fake stories appear out of nowhere, and tend to evaporate just as quickly. 

Timothy R. Tangherlini et al. An automated pipeline for the discovery of conspiracy and conspiracy theory narrative frameworks: Bridgegate, Pizzagate and storytelling on the web, PLOS ONE (2020). DOI: 10.1371/journal.pone.0233879. http://dx.doi.org/10.1371/journal.pone.0233879

Same article but from The Conversation, Nov 2020.


Coronavirus - Harmful lies spread easily due to lack of UK law
Jul 2020, BBC News

I won't even bother to link here the other recent report about how malicious social interference dramatically (and wholly undetected?) altered public opinion in the Brexit election. I think that's general public knowledge by now.

From the article: Despite investing in measures, the UK Digital, Culture, Media and Sport Committee says tech firms can not be left to self-regulate. They also said that social media firms' advertising-focused business models had encouraged the spread of misinformation and allowed "bad actors" to make money from emotional content, regardless of the truth. By bad actors, their report identifies state actors, including Russia, China and Iran; the Islamic State group; far-right groups in the US and the UK; and scammers.


Tracking misinformation campaigns in real-time is possible, study shows
Aug 2020, phys.org

Metadata is key. 

There's so much good information just in this summary alone, so I copying much of it:

Using data from past misinformation (troll) campaigns from China, Russia, and Venezuela waged against the United States before and after the 2016 election, combined with posts to Twitter and Reddit and the hyperlinks or URLs they included, using a "postURL pair," which is simply a post with a hyperlink.

8,000 accounts and 7.2 million posts from late 2015 through 2019.

They reinforced their model with a baseline of a rich dataset of politically engaged and average user posts collected over many years by NYU's Center for Social Media and Politics (CSMaP).

They teased out data for timing, word count, whether the mentioned URL domain is a news website, and most importantly "metacontent," for example, whether a URL was in the top 25 political domains shared by other trolls.

Trolls referring to other trolls and not new sources: "Both trolls and normal people often include local news URLs in their posts, but the trolls tended to mention different users in such posts, probably because they are trying to draw their audience's attention in a new direction. Metacontent lets the algorithm find such anomalies."
-Jacob N. Shapiro, professor of politics and international affairs at the Princeton School of Public and International Affairs

Across almost all of the 463 different tests, it was clear which posts were and were not part of an influence operation, meaning that content-based features can indeed help find coordinated influence campaigns on social media.

Venezuelan trolls only retweeted certain people and topics, making them easy to detect. Russian and Chinese trolls were better at making their content look organic, but they, too, could be found. In early 2016, for example, Russian trolls quite often linked to far-right URLs, which was unusual given the other aspects of their posts, and, in early 2017, they linked to political websites in odd ways. Overall, Russian troll activity became harder to find as time went on. It is possible that investigative groups or others caught on to the false information, flagging the posts and forcing trolls to change their tactics or approach, though Russians also appear to have produced less in 2018 than in previous years.

via Princeton University, New York University and New Jersey Institute of Technology: M. Alizadeh el al., "Content-based features predict social media influence operations," Science Advances (2020). doi:10.1126/sciadv.abb5824. https://advances.sciencemag.org/lookup/doi/10.1126/sciadv.abb5824

Nikon Small World 2020 - Single Neuron - Nadia Efimova

A novel strategy for quickly identifying twitter trolls
Aug 2020, phys.org

50 tweets is all it takes. 

Using sociolinguistic "troll-specific restrictions" on words and word pairs, the signal in the noise becomes clear. Granted, they would have to update their restrictions depending on what cultural phenomena they're using in their campaigns, but it works in real time. 

Also, they checked their model using a library of Russian troll tweets; because this exists.

Monakhov S (2020) Early detection of internet trolls: Introducing an algorithm based on word pairs / single words multiple repetition ratio. PLoS ONE 15(8): e0236832. doi.org/10.1371/journal.pone.0236832


Calls to city 311 lines can predict opioid overdose hotspots
Nov 2020, phys.org

This is just old school predictive analytics.

"Complaints to the city about issues like streetlight repair, abandoned vehicles and code violations reflect disorder and distress that are also linked to opioid use," said Yuchen Li, lead author of the study and doctoral candidate in geography at The Ohio State University.

via Ohio State: Scientific Reports (2020). DOI: 10.1038/s41598-020-76685-z


New algorithm signals a possible disease resurgence
Sep 2020, phys.org

The algorithm monitors public health data to detect statistical patterns associated with impending outbreaks to predict the reemergence of existing infectious diseases.

Changes in vaccination rates, or even changes in climate, can predict the emergence of an epidemic.

They used 10,000 sets of simulated case reports covering a period of 10 years. When tested on a 2004-5 Mumps outbreak, the model predicted it four years on advance. Looking at Pertussis, it could predict 100% at the state level 1990-2000. It works for vector-borne disease as well (ticks, mosquitoes).

Tobias S. Brett et al. Dynamical footprints enable detection of disease emergence, PLOS Biology (2020). DOI: 10.1371/journal.pbio.3000697


How Facebook, Twitter, YouTube, and Reddit are handling the election
Nov 2020, Ars Technica

"In addition to its stated policies, Facebook is reportedly standing ready to implement a slew of policies it has used in the past for managing election content in "at-risk" countries such as Sri Lanka and Myanmar. These tools would include limiting the rate at which content beginning to go viral can travel, as well as tweaking the newsfeed to change what type of content users see."

So we can stop the virus from spreading all along.

Wednesday, January 13, 2021

Origamibots and Trefoil Knots - Messengers of the Future


Quantum origami and light knots, we just can't get enough.

image credit: Microphoto of a human hair by Robert Vierthaler for the the Nikon Small World 2020 competition.

Origami microbots - Centuries-old artform guides cutting-edge advances in tiny machines
Aug 2020, phys.org

Origamibots.

They change shape depending on what they need to do. It's more efficient, and they can now be made smaller, faster, and more precise. It also sounds like it's covered in a thin layer of gold, then polymer, and this allows heat to be applied and to travel across the surface of the microbot, controlling its folds with hots and colds. 

via University of Michigan, Yi Zhu et al, Elastically and Plastically Foldable Electrothermal Micro‐Origami for Controllable and Rapid Shape Morphing, Advanced Functional Materials (2020). DOI: 10.1002/adfm.202003741

This is a Kressling pattern, courtesy of NOVA

Building mechanical memory boards using origami
Aug 2020, phys.org

It's an origami mechanical memory board. It's called a Kresling-inspired mechanical switch, or KIMS. Kressling pattern origami are ones that can flip between two shapes, depending on how you configure them, and this one is configured by vibrating a platform on which it rests. The vibration activates a mechanical switch.
 
This is just fucking crazy. Imagine making origami metamaterial that have properties like an electric circuit. It would be like a 3D computer where the transistors are an integral part if the structure, instead of being in a central location, they're all over, like cells in a body.

Framed Trefoil Knot, University of Ottawa

Classified knots - Researchers create optical framed knots to encode information
Oct 2020, phys.org

More origami people. Made of lights, of course.

Optical framed knots distributing secret cryptographic keys, providing a platform for topological quantum computations, they say.

Framed knots are when you take a strip of paper and try to tie a knot with it, kind of like M.C.Escher's mobius strip.

It has to do with light beams, structured light beams, using beam-shaping techniques that can actually shape the light beam to have knots in it? Cryptographic code knots sounds like a great idea.

Hugo Larocque et al, Optical framed knots as information carriers, Nature Communications (2020). DOI: 10.1038/s41467-020-18792-z

Face Rec and Image Tech


Deepfake used to attack activist couple shows new disinformation frontier
Experts in deceptive imagery used state-of-the-art forensic analysis programs to determine that Taylor’s profile photo is a hyper-realistic forgery - a “deepfake.”
Something about the Ventriloquist's Dummy and the dangers of impersonating an influential leader.



Image cloaking tool thwarts facial recognition programs
Aug 2020. phys.org

Reverse camoufaluge? Fill the pool with dirty data; it's a simple approach. This technique is named Fawkes after the V for Vendetta guy, also known as the Anonymous Mask from the online shadow activist group circa 2010.

"What we are doing is using the cloaked photo in essence like a Trojan Horse, to corrupt unauthorized models to learn the wrong thing about what makes you look like you and not someone else," Fawkes co-creator Ben Zhao, a computer science professor at the University of Chicago, said.

"Our original goal was to serve as a preventative measure for Internet users to inoculate themselves against the possibility of some third-party, unauthorized model," the team recently stated in a FAQ sheet.


Deepfake detection tool unveiled by Microsoft
Sep 2020, BBC News
"The only really widespread use we've seen so far is in non-consensual pornography against women," commented Nina Schick, author of the book Deep Fakes and the Infocalypse.

"But synthetic media is expected to become ubiquitous in about three to five years, so we need to develop these tools going forward

Synthetic media and fingerprinted news - Microsoft has teamed up with the BBC, among other media organisations, to support Project Origin, an initiative to "mark" online content in a way that makes it possible to spot automatically any manipulation of the material.

New photon-counting camera captures 3-D images with record speed and resolution
Apr 2020, phys.org

24,000 fps:
The camera's speed makes it possible to measure the time a photon hits the sensor very precisely. This information can be used to calculate how long it takes individual photons to travel the distance from a source to the camera, known as time-of-flight. Combining time-of-flight information with the ability to capture a million pixels simultaneously enables extremely high-speed reconstruction of 3-D images.

In Bits and Pieces


For those of you who can't wait to be fully cybernetic; we're almost there.

And the above image is a microphoto of the microvasculatire of the optic nerve by Dr. Dong An for the Nikon Small World 2020 competition.


Nanotechnology applied to medicine - The first liquid retina prosthesis
Jul 2020, phy.org

Artificial Liquid Retinal Prosthesis: Already on the second generation of artificial retinas, this one is biomimetic:
Compared to other existing approaches, the new liquid nature of the prosthesis ensures fast and less traumatic surgery that consists of microinjections of nanoparticles directly under the retina, where they remain trapped and replace the degenerated photoreceptors; this method also ensures increased effectiveness.
And another microphoto of retinal blood vessels by Dr. Nicolás Cuenca and Isabel Ortuño-Lizarán, also for the the Nikon Small World 2020 competition.

Using light instead of electricity in cochlear implants
Aug 2020, phys.org

And here, a next-generation cochlear prosthesis. 

Nanodiamonds and Quantum Crystals


Team finds path to nanodiamond from graphene
Oct 2020, phys.org

Not sure what's more exciting the pic or nanodiomands in general. (image: Diamane, credit to Pavel Sorokin)

They call it diamane, but nanodiamond sounds good enough no?

A "pinpoint" of pressure on a thick sandwich of graphene layers can propagate a crystallizing chemical reaction. Normally, to make diamonds, you need a lot more pressure than a pinpoint. But being nano- and all, we throw out all the rules, and can now make single-crystal diamond film. 


Researchers building a harder diamond, called pentadiamonds
Jul 2020, phys.org

Pentadiamonds.

Also, the "diamond anvil cell" is a high-pressure device used in geology, engineering, materials science experiments, and heavy metal band names.


Crystal wars - Research may lead to more efficient crystal engineering methods
Jul 2020, phys.org

Just here for the crystals:
A team of researchers at the University of Tokyo and Fudan University has studied the process of crystallization when more than one structural arrangement is possible. By reducing the noise from random fluctuations, they found that transient precursors of the various crystalline orderings coexist and compete with each other. This work may help lead to more efficient crystal engineering methods.
Crystal engineering.


First sighting of mysterious Majorana fermion on a common metal
Apr 2020, phys.org
Majorana fermions require growing very precise crystals of semiconducting material and it is very challenging to turn these into high-quality superconductors.

Physicists at MIT and elsewhere have observed evidence of Majorana fermions—particles that are theorized to also be their own antiparticle—on the surface of a common metal: gold. This is the first sighting of Majorana fermions on a platform that can potentially be scaled up. 

"The next push will be to take these objects and make them into qubits, which would be huge progress toward practical quantum computing," adds co-author Patrick Lee, the William and Emma Rogers Professor of Physics at MIT.

Quantum simulation of quantum crystals
Aug 2020, phys.org

Quantums crystals and BECs.

They're artificial and highly fragile systems, but a place where we can play with atoms.


Scientists make insta-bling at room temperature
Nov 2020, phys.org

Diamonds muthafu**

Tuesday, January 12, 2021

Thermodynamic Hallucinations


What's up with that? 

Just looking for headlines absent from the search results. 
As of today's date, this should be number one (of one). 

Totally unrelated image via the Nikon Small World competition: Actin, by Dr. Andrew Moore and Dr. Dvir Gur
 

Sunday, January 10, 2021

Exobiological Skin Shell Sensors and Remote Control Metabolism Engineering



Just trying to come up with a catchy title for a quick list of developments in color application technology, but also biomimicry, wearables, and radioactive fungi. We're finishing off with some recent bits in the endless stream of synthetic biology advancements that will eventually define the 21st century.

Images courtesy of Nikon's Small World Challenge, best microscopy photos you can get!

The first one is a snail tongue by Dr. Igor Siwanowicz, and has nothing to do with the articles below.


Blue dye from red beets - Chemists devise a new pigment option
Apr 2020, phys.org

Non-toxic and Blue dye do not belong in the same sentence, historically. But now, a new class of dyes called pseudo-natural dyes use the same molecules that come from bright red beets (betalains), and they change the carbon-nitrogen chemical bond to a carbon-carbon bond. These new molecules are called quasibetalains, and they're blue.

On a sidenote, I do not recognize the opening statement in the above link, which says that blue is the most liked color the world over. In my art room, in the box of color pencils, and in the box of markers, both followed the same pattern every year for every class: the red pencils are the first to go, followed by blue; it gets fuzzy after that, but they all end up with nothing but brown, orange and yellow, and in that order. After all, brown is the entropic heat death of the rainbow, kind of an anti-color. 

B. C. Freitas-Dörr et al. A metal-free blue chromophore derived from plant pigments, Science Advances (2020). DOI: 10.1126/sciadv.aaz0421
http://dx.doi.org/10.1126/sciadv.aaz0421


Red light for stress - A color-changing organic crystal
May 2020, phys.org

Here we've got some organic crystals that change color based on pressure, but that can also return to their original shape. And that's called superelastochromism.

The idea here is to use them as sensors to show you where a building is getting out of whack. But there's a whole lot more you can imagine doing with these.

via the University of Tokyo: Toshiki Mutai et al, A superelastochromic crystal, Nature Communications (2020). DOI: 10.1038/s41467-020-15663-5


Liquid crystals create easy-to-read, color-changing sensors
Jul 2020, phys.org

Similar thing here; they're pushing and pulling liquid crystals to manipulate their color. The thing is, these don't just change color based on pressure, but even temperature. The walls in your room could change if the temperature shifts too quickly, for example. 
 
Then again, if you're wearing this, it could show you inflammation in your body. 

via the University of Chicago: "Prolate and oblate chiral liquid crystal spheroids". Juan de Pablo et al. Science Advances (2020). DOI: 10.1126/sciadv.aba6728 

Mohamed Ghassen Nouira makes purple dye.

Passion for purple revives ancient dye in Tunisia
Aug 2020, phys.org

Emperors hate him. This guy figures out how to take special snails and make purple dye out of them, just like how they used to do. Imperial clothiers and dye-makers knew how to do this centuries ago, and the art was lost to the time in between us and them. 

And that wasn't a mistake. The process of making Tyrian Purple was a secret, kind of like how we try to keep people from making believable hundred dollar bills. 

Think about it, if you, a Carthaginian hustlepimp, could make your own purple robe and deceive the court into thinking you were royalty, kind of like an ancient Borat, you could cause a ruckus. And we can't have a ruckus in the upper reaches of the royal elites. 

More importantly, empires made their fortunes selling this dye to other empires. Can't have some guy in his garage creeping into your marketshare. 

100,000 grams (100kg) of shelled murex yields 1 gram of Tyrian Purple, and goes for $2,400 - $4,000 per gram, and takes about a week's worth of work.

Sidenote, if you search the words "royal elite" it reeks of fake shit and dupery, which I think is funny because it's a redundant term that would only be used by people who don't really know what either word means.


Testing Chernobyl fungi as a radiation shield for astronauts
Aug 2020, phys.org

Bioshell.

They want to coat spaceships in a shell of superfungus to protect from radiation. They didn't create these fungi by engineering them in a lab; they found them. 

And where are on earth are you going to find an organism that metabolizes radioactive isotopes? Yes, thank you Chernobyl.

Graham K. Shunk et al. A Self-Replicating Radiation-Shield for Human Deep-Space Exploration: Radiotrophic Fungi can Attenuate Ionizing Radiation aboard the International Space Station, bioRxiv (2020). DOI: 10.1101/2020.07.16.205534. http://dx.doi.org/10.1101/2020.07.16.205534

Beetle leg - Aigars Jukna

Low-cost, fly footpad-like adhesive structure capable of repeated attachment/detachment
Aug 2020, phys.org

The design is based on fly feet, fine, that's pretty standard biomimicry. But the way they learned how to manufacutre the thing is by looking at how the fly itself makes flies, in the pupa. That's next level biomimicry. And it allows you to repeatedly stick and unstick  without losing any of its stickiness.

Ken-ichi Kimura et al, Framework with cytoskeletal actin filaments forming insect footpad hairs inspires biomimetic adhesive device design, Communications Biology (2020). DOI: 10.1038/s42003-020-0995-0


Florida mosquitoes - 750 million genetically modified insects to be released
Aug 2020, BBC News

I'm not sure where this belongs on this list, but modified mosquitoes were approved by federal regulators, fuck yeah.


Development of photovoltaics that can be applied like paint for real-life application
Sep 2020, phys.org

It's a solar cell solution that can coat surfaces. Eventually it will coat your body, so that you can live forever.

So Hyun Park et al, Developement of highly efficient large area organic photovoltaic module: Effects of nonfullerene acceptor, Nano Energy (2020). DOI: 10.1016/j.nanoen.2020.105147


Evergreen needles act as air quality monitors
Sep 2020, phys.org

Biosensors that measure the magnetism of the particulate matter that accumulates on the needles. Pretty smart.

Grant Rea‐Downing et al, Evergreen needle magnetization as a proxy for particulate matter pollution in urban environments, GeoHealth (2020). DOI: 10.1029/2020GH000286

Bindweed Epidermis - Michael Gibson

Electronic skin promises cheap and recyclable alternative to wearable devices
Nov 2020, phys.org

Man.

"Stretchy and fully-recyclable circuit board that's inspired by, and sticks onto, human skin."

via University of Colorado Boulder:  "Heterogeneous integration of rigid, soft, and liquid materials for self-healable, recyclable, and reconfigurable wearable electronics" Science Advances (2020). DOI: 10.1126/sciadv.abd0202


Engineers print wearable sensors directly on skin without heat
Oct 2020, phys.org

Direct printing for on-body sensors, usually hindered by the bonding process on skin. You can't sinter skin. So they add an "aid layer", basically a protective insulator for the skin that bonds at room temperature. And room temperature.


Artificial skin heals wounds and makes robots sweat
Jun 2020, phys.org

It's about time these robots take over. This is a skin (or "smart coating" when we're trying not to make it sound like the robots will become human and take over) that control fluid flow across its membrane via radio, or UV. And it's made of liquid-crystal molecules, like LCD.

Nylon Stockings - Alexander Klepnev

Thanks to flexoskeletons, these insect-inspired robots are faster and cheaper to make
Apr 2020, phys.org

Just flexoskeletons.


Machine learning takes on synthetic biology - algorithms can bioengineer cells for you
Sep 2020, phys.org

This one is about creating virtual laboratories that produce probable outcomes. They used to say, if you can't build it, you can't know it. But now, we just let the computer figure it out. 

Anyway, they specifically say engineering microbiomes. That's a bit new, because although engineering cells has now penetrated the consumer market (fake meat), engineering the entire ecosystem is a new frontier.

Nature Communications. A machine learning Automated Recommendation Tool for synthetic biology. Tijana Radivojević. (2020). DOI: 10.1038/s41467-020-18008-4

Unopened Flower Bud - Charles B. Krebs


Chemists expand genetic code of E. coli to produce 21st amino acid, giving it new abilities
Aug 2020, phys.org

Bodymods and beyond.

They've created a new amino acid, a "noncanonical amino acid" which kind of means not a real amino acid. It's called 5-hydroxyl-tryptophan (5HTP), and it's now the 21st amino acid. Kind of like how the ampersand was the 27th letter in the alphabet for a while.

They put the code for this protein into a "blank" space of the E. coli's genetic code. This means that the bacteria is now a factory that we designed to produce a molecule. It's a living factory. We're all living factories, bioreactors. But we don't make anything we want with our bodies. In this case, we've reverse-engineered the "making" process itself. The is called biohacking. 

Yuda Chen et al, Creation of Bacterial Cells with 5-Hydroxytryptophan as a 21st Amino Acid Building Block, Chem (2020). DOI: 10.1016/j.chempr.2020.07.013


Researchers develop a yeast-based platform to boost production of rare natural molecules
Aug 2020, phys.org

Again, biofarms of the future.


Engineers reprogram yeast cells to become microscopic drug factories
Sep 2020, phys.org

"Metabolic engineering" is another term for this. They're reprogramming yeast cells at the genetic level to convert sugars and amino acids into drugs. (And someting about the name has me thinking these are hallucinogenic drugs?)

Biosynthesis of medicinal tropane alkaloids in yeast, Nature (2020). DOI: 10.1038/s41586-020-2650-9 

Duckweed Root Decay - Dr. Robert Markus

Soil-powered fuel cell promises cheap, sustainable water purification
Oct 2020, phys.org

Soil microbial fuel cells (SMFCs)


Lowering atmospheric CO2 in large-scale renewable energy electrochemical process
Jun 2020, phys.org

This plus synthetic biology aka the biological revolution, or the 5th(?) industrial revolution, and I say that in 100 years, we'll be taking more CO2 out of the air than what we put in. 
Researchers at the National Renewable Energy Laboratory (NREL) have been focusing on improving electrochemical routes to convert CO2, which would otherwise be released into the atmosphere, into a range of value-added products.

the research team created a high rate of formate production and product selectivity, the latter of which is critical to reduce the need for further costly separations processes downstream. The formate could then be fed to biological organisms or coupled with enzymes, resulting in robust interactions between the formate and enzymes that yield high-density chemicals or fuels, such as ethylene or ethanol, respectively.

The program's larger goal is to use highly efficient electrons at industry scale to convert a waste compound such as CO2 into a multitude of more useful industry-relevant, energy-dense fuels or chemicals, such as polyethylene, which has a large global market.

Google conducts largest chemical simulation on a quantum computer to date
Aug 2020, phys.org

Stuff like this scares the shit out of me, although it's hard to articulate why. Probably because quantum chemical simulator is another word for reality generator, and I just don't think we're ready to activate the mass transference device yet.

Hartree-Fock on a superconducting qubit quantum computer, Science  28 Aug 2020: Vol. 369, Issue 6507, pp. 1084-1089, DOI: 10.1126/science.abb9811


IBM announces AI based chemistry lab - RoboRXN
Sep 2020, phys.org

Same as above.

Automating chemical synthesis with RoboRXN. https://www.ibm.com/blogs/research/2020/08/roborxn-automating-chemical-synthesis/

More Snail Tongue - Dr. Igor Siwanowicz

Remote control of blood sugar - Electromagnetic fields treat diabetes in animal models
Oct 2020, phys.org

And lastly; completely fucking bonkers.

Exposing diabetic mice to a combination of static electric and magnetic fields for a few hours per day normalizes two major hallmarks of type 2 diabetes. And it works by remote control, and it can be applied in your sleep to normalize your blood sugar for the rest of the day.

EMF therapy. Sounds like absolute and total bullshit. Remote control blood sugar.

And this makes it even better; "The initial finding was pure serendipity." One scientist borrowed another scientist's mice; he was working on EMF exposure, and she was working on bloodsugar. Using his mice in her experiment, she found something strange going on. Now we think the EMFs prolong activation of superoxide molecules in the liver, rebalancing the body's response to insulin.

Later, they even treated human liver cells with EMFs, for six hours, and found that the surrogate marker for insulin sensitivity improved.

Calvin S. Carter et al, Exposure to Static Magnetic and Electric Fields Treats Type 2 Diabetes, Cell Metabolism (2020). DOI: 10.1016/j.cmet.2020.09.012